Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs76750463 | chr12:5434979 | A/G | 0 | 206 | 8.87 | 10.88 | 1.87 | KM Plot |
| BLCA | rs77056045 | chr15:41049190 | G/A | 2.34E-6 | 212 | 10.7 | 7.43 | 6.13 | KM Plot |
| BLCA | rs773662 | chr12:56602333 | T/C | 3.61E-5 | 214 | 9.63 | 8.35 | 0 | KM Plot |
| BLCA | rs7782299 | chr7:100456163 | G/A | 2.53E-5 | 212 | 11.7 | 9.63 | 4.2 | KM Plot |
| BLCA | rs7784933 | chr7:100461565 | G/A | 1.15E-5 | 213 | 12 | 9.25 | 4.2 | KM Plot |
| BLCA | rs7789085 | chr7:100472826 | C/T | 1.86E-5 | 216 | 12 | 9.47 | 4.2 | KM Plot |
| BLCA | rs7800241 | chr7:100468103 | G/A | 1.19E-5 | 215 | 12 | 9.63 | 4.2 | KM Plot |
| BLCA | rs78191225 | chr1:103119105 | A/G | 0 | 212 | 9.1 | 13.1 | 2.07 | KM Plot |
| BLCA | rs78222590 | chr1:103130139 | T/C | 0 | 213 | 8.98 | 15.15 | 2.07 | KM Plot |
| BLCA | rs78656407 | chr15:40966741 | G/C | 3.65E-6 | 214 | 10.7 | 6.77 | 6.13 | KM Plot |
| BLCA | rs78835222 | chr12:31291163 | G/A | 1.36E-6 | 208 | 9.8 | 8.42 | 0.87 | KM Plot |
| BLCA | rs7893993 | chr10:11874190 | A/G | 1.33E-5 | 216 | 5.48 | 13.72 | 8.72 | KM Plot |
| BLCA | rs7907868 | chr10:126557826 | C/A | 1.03E-5 | 206 | 8.53 | 11.07 | 5.15 | KM Plot |
| BLCA | rs79099600 | chr15:40905640 | A/G | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs7947841 | chr11:34491680 | G/A | 4.02E-5 | 210 | 10.7 | 7.88 | 2.68 | KM Plot |